Convergence towards equilibrium for a model with partial diffusion
Delphine Salort
,
Didier Smets
2022
Preprints, Working Papers, ...
hal-03845918v1
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Deep Local Analysis evaluates protein docking conformations with locally oriented cubes
Yasser Mohseni Behbahani
,
Simon Crouzet
,
Elodie Laine
,
Alessandra Carbone
Journal articles
hal-03906697v1
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iBIS2Analyzer: a web server for a phylogeny-driven coevolution analysis of protein families
Francesco Oteri
,
Edoardo Sarti
,
Francesca Nadalin
,
Alessandra Carbone
Journal articles
hal-03700047v1
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Predicting substitutions to modulate disorder and stability in coiled-coils
Yasaman Karami
,
Paul Saighi
,
Rémy Vanderhaegen
,
Denis Gerlier
,
Sonia Longhi
et al.
Journal articles
hal-03911459v1
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Local Interaction Signal Analysis Predicts Protein-Protein Binding Affinity
Raffaele Raucci
,
Elodie Laine
,
Alessandra Carbone
Journal articles
hal-01844368v1
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Meet-U: educating through research immersion
Nika Abdollahi
,
Alexandre Albani
,
Eric Anthony
,
Agnes Baud
,
Mélissa Cardon
et al.
Journal articles
hal-01722019v1
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Jointly aligning a group of DNA reads improves accuracy of identifying large deletions
Anish M S Shrestha
,
Martin C. Frith
,
Kiyoshi Asai
,
Hugues Richard
Journal articles
hal-01727521v1
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The evolution of the temporal program of genome replication
Nicolas Agier
,
Stéphane Delmas
,
Qing Zhang
,
Aubin Fleiss
,
Yan Jaszczyszyn
et al.
Journal articles
hal-02175123v1
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INTerface Builder: a fast protein-protein interface reconstruction tool
Chloé Dequeker
,
Elodie Laine
,
Alessandra Carbone
Journal articles
hal-01617113v1
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Protein-protein interaction specificity is captured by contact preferences and interface composition
Francesca Nadalin
,
Alessandra Carbone
Journal articles
hal-01596388v1
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DiNAMO: Exact method for degenerate IUPAC motifs discovery, characterization of sequence-specific errors
Chadi Saad
,
Laurent Noé
,
Hugues Richard
,
Julie Leclerc
,
Marie-Pierre Buisine
et al.
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques , Jul 2017, Lille, France
Conference papers
hal-01574630v1
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BIS2Analyzer: a server for co-evolution analysis of conserved protein families
Francesco Oteri
,
Francesca Nadalin
,
Raphaël Champeimont
,
Alessandra Carbone
Journal articles
hal-01520493v1
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Plasmobase: a comparative database of predicted domain architectures for Plasmodium genomes
Juliana Bernardes
,
Catherine Vaquero
,
Alessandra Carbone
Journal articles
hal-01556734v1
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Decrypting how protein move and change their shape
Elodie Laine
Proceeding of 16th International Symposium on Mathematical and Computational Biology , 2017
Book sections
hal-01587939v1
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Conservation, co-évolution et dynamique : de la séquence à la fonction
Alessandra Carbone
ISTE Éditions Ltd.
Colloque de Cerisy “Sciences de la vie, sciences de l’information” ,
, 2017, Colloque de Cerisy “Sciences de la vie, sciences de l’information”, 978-1-78405-287-4
Book sections
hal-01592629v1
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Resonances and $CP$ violation in $B_s^0$ and $\overline{B}_s^0 \to J/\psi K^+K^-$ decays in the mass region above the $\phi(1020)$
Roel Aaij
,
Bernardo Adeva
,
Marco Adinolfi
,
Ziad Ajaltouni
,
Simon Akar
et al.
Journal articles
hal-01582785v1
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Combining machine learning and evolution for the annotation of metagenomics data
Ari Ugarte
Theses
tel-01666046v1
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Improvement in Protein Domain Identification Is Reached by Breaking Consensus, with the Agreement of Many Profiles and Domain Co-occurrence
Juliana Bernardes
,
Gerson Zaverucha
,
Catherine Vaquero
,
Alessandra Carbone
Journal articles
hal-01390566v1
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The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report
Ariel Chernomoretz
,
Gustavo Stolovitzky
,
Pawel P. Labaj
,
Alexandra B. Graf
,
Aaron Darling
et al.
Journal articles
hal-01528508v1
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Great interactions: How binding incorrect partners can teach us about protein recognition and function
Lydie Vamparys
,
Benoist Laurent
,
Alessandra Carbone
,
Sophie Sacquin-Mora
Journal articles
hal-01347160v1
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Reconstruction of ancestral chromosome architecture and gene repertoire reveals principles of genome evolution in a model yeast genus
Nikolaos Vakirlis
,
Véronique Sarilar
,
Guénola Drillon
,
Aubin Fleiss
,
Nicolas Agier
et al.
Journal articles
hal-01331620v1
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Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions
Alberto Amato
,
Gianluca Dell’aquila
,
Francesco Musacchia
,
Rossella Annunziata
,
Ari Ugarte
et al.
Journal articles
hal-01528507v1
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Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean
Antonio Emidio Fortunato
,
Marianne Jaubert
,
Gen Enomoto
,
Jean-Pierre Bouly
,
Raffaella Raniello
et al.
Journal articles
hal-01528502v1
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Dissecting protein architecture with communication blocks and communicating segment pairs
Yasaman Karami
,
Elodie Laine
,
Alessandra Carbone
Journal articles
hal-01260475v1
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JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures
Hughes Ripoche
,
Elodie Laine
,
Nicoletta Ceres
,
Alessandra Carbone
Journal articles
hal-01417190v1
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Coevolution analysis of Hepatitis C virus genome to identify the structural and functional dependency network of viral proteins
Raphaël Champeimont
,
Elodie Laine
,
Shuang-Wei Hu
,
Francois Penin
,
Alessandra Carbone
et al.
Journal articles
hal-01320023v1
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Tma108, a putative M1 aminopeptidase, is a specific nascent chain-associated protein in Saccharomyces cerevisiae
Thierry Delaveau
,
Dimitri Davoine
,
Ariane Jolly
,
Antoine Vallot
,
Jérôme O. Rouvière
et al.
Journal articles
hal-01361729v1
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Protein social behavior makes a stronger signal for partner identification than surface geometry
Elodie Laine
,
Alessandra Carbone
Journal articles
hal-01400887v1
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How binding incorrect partners can lead to the prediction of correct interfaces: Results from a massive cross-docking study on proteins
Sophie Sacquin-Mora
,
Lydie Vamparys
,
Alessandra Carbone
Protein Science , 2015, 24 (1, SI), pp.243-244
Journal articles
hal-01528524v1
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E-Biothon: an experimental platform for BioInformatics
Michel Daydé
,
Benjamin Depardon
,
Alain Franc
,
Jean-François Gibrat
,
Romaric Guillier
et al.
Conference papers
hal-01207320v1
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