M. L. Crowe, C. Serizet, V. Thareau, S. Aubourg, P. Rouze et al., CATMA: a complete Arabidopsis GST database, Nucleic Acids Research, vol.31, issue.1, pp.156-158, 2003.
DOI : 10.1093/nar/gkg071

S. Abel, P. W. Oeller, and A. Theologis, Early auxin-induced genes encode shortlived nuclear proteins, Proc Natl Acad Sci, pp.326-330, 1994.
DOI : 10.1073/pnas.91.1.326

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC42940

E. Allen, Z. Xie, A. M. Gustafson, and J. C. Carrington, microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants, Cell, vol.121, issue.2, pp.207-221, 2005.
DOI : 10.1016/j.cell.2005.04.004

J. Alvarez and D. R. Smyth, CRABS CLAW and SPATULA, two Arabidopsis genes that control carpel development in parallel with AGAMOUS, Development, vol.126, pp.2377-2386, 1999.

A. Bailly, V. Sovero, V. Vincenzetti, D. Santelia, D. Bartnik et al., Modulation of P-glycoproteins by Auxin Transport Inhibitors Is Mediated by Interaction with Immunophilins, Journal of Biological Chemistry, vol.283, issue.31, pp.21817-21826, 2008.
DOI : 10.1074/jbc.M709655200

K. Bainbridge, S. Guyomarc-'h, E. Bayer, R. Swarup, M. Bennett et al., Auxin influx carriers stabilize phyllotactic patterning, Genes & Development, vol.22, issue.6, pp.810-823, 2008.
DOI : 10.1101/gad.462608

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2275433

S. Bak, H. L. Nielsen, and B. A. Halkier, The presence of CYP79 homologues in glucosinolate-producing plants shows evolutionary conservation of the enzymes in the conversion of amino acid to aldoxime in the biosynthesis of cyanogenic glucosides and glucosinolates, Plant Molecular Biology, vol.38, issue.5, pp.725-734, 1998.
DOI : 10.1023/A:1006064202774

S. Bak, F. E. Tax, K. A. Feldmann, D. W. Galbraith, and R. Feyereisen, CYP83B1, a Cytochrome P450 at the Metabolic Branch Point in Auxin and Indole Glucosinolate Biosynthesis in Arabidopsis, THE PLANT CELL ONLINE, vol.13, issue.1, pp.101-111, 2001.
DOI : 10.1105/tpc.13.1.101

V. Balanza, M. Navarrete, M. Trigueros, and C. Ferrandiz, Patterning the female side of Arabidopsis: the importance of hormones, Journal of Experimental Botany, vol.57, issue.13, pp.3457-3469, 2006.
DOI : 10.1093/jxb/erl188

C. Balestrieri, D. Castaldo, A. Giovane, L. Quagliuolo, and L. Servillo, A glycoprotein inhibitor of pectin methylesterase in kiwi fruit (Actinidia chinensis), European Journal of Biochemistry, vol.90, issue.1, pp.183-187, 1990.
DOI : 10.1006/abio.1976.9999

N. Ballas, L. M. Wong, M. Ke, and A. Theologis, Two auxin-responsive domains interact positively to induce expression of the early indoleacetic acid-inducible gene PS-IAA4/5., Proceedings of the National Academy of Sciences, vol.92, issue.8, pp.3483-3487, 1995.
DOI : 10.1073/pnas.92.8.3483

N. Ballas, L. M. Wong, and A. Theologis, Identification of the Auxin-responsive Element, AuxRE, in the Primary indoleacetic Acid-inducible Gene, PS-IAA4/5, of Pea (Pisum sativum), Journal of Molecular Biology, vol.233, issue.4, pp.580-596, 1993.
DOI : 10.1006/jmbi.1993.1537

K. Barley, Why hypocotyl extension mutants need to be characterized at the cell level: a case study of axr3-1, Journal of Experimental Botany, vol.55, issue.399, pp.1071-1078, 2004.
DOI : 10.1093/jxb/erh115

I. Barlier, M. Kowalczyk, A. Marchant, K. Ljung, R. Bhalerao et al., The SUR2 gene of Arabidopsis thaliana encodes the cytochrome P450 CYP83B1, a modulator of auxin homeostasis, Proceedings of the National Academy of Sciences, vol.97, issue.26, pp.14819-14824, 2000.
DOI : 10.1073/pnas.260502697

B. Bartel and G. R. Fink, ILR1, an amidohydrolase that releases active indole-3-acetic acid from conjugates, Science, vol.268, issue.5218, pp.1745-1748, 1995.
DOI : 10.1126/science.7792599

M. Beato and J. Klug, Steroid hormone receptors: an update, Human Reproduction Update, vol.6, issue.3, pp.225-236, 2000.
DOI : 10.1093/humupd/6.3.225

URL : http://humupd.oxfordjournals.org/cgi/content/short/6/3/225

E. J. Belfield, B. Ruperti, J. A. Roberts, and S. Mcqueen-mason, Changes in expansin activity and gene expression during ethylene-promoted leaflet abscission in Sambucus nigra, Journal of Experimental Botany, vol.56, issue.413, pp.817-823, 2005.
DOI : 10.1093/jxb/eri076

R. Benjamins, A. Quint, D. Weijers, P. Hooykaas, and R. Offringa, The PINOID protein kinase regulates organ development in Arabidopsis by enhancing polar auxin transport, Development, vol.128, pp.4057-4067, 2001.

E. Benkova, M. Michniewicz, M. Sauer, T. Teichmann, D. Seifertova et al., Local, Efflux-Dependent Auxin Gradients as a Common Module for Plant Organ Formation, Cell, vol.115, issue.5, pp.591-602, 2003.
DOI : 10.1016/S0092-8674(03)00924-3

M. J. Bennett, A. Marchant, H. G. Green, S. T. May, S. P. Ward et al., Arabidopsis AUX1 Gene: A Permease-Like Regulator of Root Gravitropism, Science, vol.273, issue.5277, pp.948-950, 1996.
DOI : 10.1126/science.273.5277.948

S. R. Bennett, J. Alvarez, G. Bossinger, and D. R. Smyth, Morphogenesis in pinoid mutants of Arabidopsis thaliana, The Plant Journal, vol.8, issue.4, pp.505-520, 1995.
DOI : 10.1046/j.1365-313X.1995.8040505.x

M. Bosch, A. Y. Cheung, and P. K. Hepler, Pectin Methylesterase, a Regulator of Pollen Tube Growth, PLANT PHYSIOLOGY, vol.138, issue.3, pp.1334-1346, 2005.
DOI : 10.1104/pp.105.059865

S. Bouton, E. Leboeuf, G. Mouille, M. T. Leydecker, J. Talbotec et al., QUASIMODO1 Encodes a Putative Membrane-Bound Glycosyltransferase Required for Normal Pectin Synthesis and Cell Adhesion in Arabidopsis, THE PLANT CELL ONLINE, vol.14, issue.10, pp.2577-2590, 2002.
DOI : 10.1105/tpc.004259

J. L. Bowman, The YABBY gene family and abaxial cell fate, Current Opinion in Plant Biology, vol.3, issue.1, pp.17-22, 2000.
DOI : 10.1016/S1369-5266(99)00035-7

J. L. Bowman, S. F. Baum, Y. Eshed, J. Putterill, and J. Alvarez, 4 Molecular Genetics of Gynoecium Development in Arabidopsis, Curr Top Dev Biol, vol.45, pp.155-205, 1999.
DOI : 10.1016/S0070-2153(08)60316-6

J. L. Bowman and D. R. Smyth, CRABS CLAW, a gene that regulates carpel and nectary development in Arabidopsis, encodes a novel protein with zinc finger and helix-loophelix domains, Development, vol.126, pp.2387-2396, 1999.

N. C. Carpita and D. M. Gibeaut, Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth, The Plant Journal, vol.99, issue.1, pp.1-30, 1993.
DOI : 10.1016/S0008-6215(00)90807-3

R. Chen, P. Hilson, J. Sedbrook, E. Rosen, T. Caspar et al., The Arabidopsis thaliana AGRAVITROPIC 1 gene encodes a component of the polar-auxin-transport efflux carrier, Proceedings of the National Academy of Sciences, vol.95, issue.25, pp.15112-15117, 1998.
DOI : 10.1073/pnas.95.25.15112

Y. Cheng, X. Dai, and Y. Zhao, Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis, Genes & Development, vol.20, issue.13, pp.1790-1799, 2006.
DOI : 10.1101/gad.1415106

Y. Cheng, X. Dai, and Y. Zhao, Auxin Synthesized by the YUCCA Flavin Monooxygenases Is Essential for Embryogenesis and Leaf Formation in Arabidopsis, THE PLANT CELL ONLINE, vol.19, issue.8, pp.2430-2439, 2007.
DOI : 10.1105/tpc.107.053009

H. T. Cho and D. J. Cosgrove, Regulation of Root Hair Initiation and Expansin Gene Expression in Arabidopsis, THE PLANT CELL ONLINE, vol.14, issue.12, pp.3237-3253, 2002.
DOI : 10.1105/tpc.006437

M. A. Ciardiello, M. Tamburrini, L. Tuppo, V. Carratore, A. Giovane et al., Pectin Methylesterase from Kiwi and Kaki Fruits:?? Purification, Characterization, and Role of pH in the Enzyme Regulation and Interaction with the Kiwi Proteinaceous Inhibitor, Journal of Agricultural and Food Chemistry, vol.52, issue.25, pp.7700-7703, 2004.
DOI : 10.1021/jf0491963

J. D. Cohen, J. P. Slovin, and A. M. Hendrickson, Two genetically discrete pathways convert tryptophan to auxin: more redundancy in auxin biosynthesis, Trends in Plant Science, vol.8, issue.5, pp.197-199, 2003.
DOI : 10.1016/S1360-1385(03)00058-X

L. Comai and T. Kosuge, Cloning characterization of iaaM, a virulence determinant of Pseudomonas savastanoi, J Bacteriol, vol.149, pp.40-46, 1982.

T. P. Cooney and H. M. Nonhebel, The measurement and mass spectral identification of indole-3-pyruvate from tomato shoots, Biochemical and Biophysical Research Communications, vol.162, issue.2, pp.761-766, 1989.
DOI : 10.1016/0006-291X(89)92375-9

D. J. Cosgrove, Growth of the plant cell wall, Nature Reviews Molecular Cell Biology, vol.96, issue.11, pp.850-861, 2005.
DOI : 10.1007/s004250000303

D. N. Cox and G. K. Muday, NPA Binding Activity Is Peripheral to the Plasma Membrane and Is Associated with the Cytoskeleton, THE PLANT CELL ONLINE, vol.6, issue.12, pp.1941-1953, 1994.
DOI : 10.1105/tpc.6.12.1941

D. 'avino, R. Camardella, L. Christensen, T. M. Giovane, A. Servillo et al., Tomato pectin methylesterase: Modeling, fluorescence, and inhibitor interaction studies?comparison with the bacterial (Erwinia chrysanthemi) enzyme, Proteins: Structure, Function, and Genetics, vol.37, issue.4, pp.830-839, 2003.
DOI : 10.1002/prot.10487

R. T. Davies, D. H. Goetz, J. Lasswell, M. N. Anderson, and B. Bartel, IAR3 Encodes an Auxin Conjugate Hydrolase from Arabidopsis, THE PLANT CELL ONLINE, vol.11, issue.3, pp.365-376, 1999.
DOI : 10.1105/tpc.11.3.365

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC144182

K. R. Davis, G. D. Lyon, A. G. Darvill, A. , and P. , Host-Pathogen Interactions : XXV. Endopolygalacturonic Acid Lyase from Erwinia carotovora Elicits Phytoalexin Accumulation by Releasing Plant Cell Wall Fragments, PLANT PHYSIOLOGY, vol.74, issue.1, pp.52-60, 1984.
DOI : 10.1104/pp.74.1.52

P. B. De-reuille, I. Bohn-courseau, K. Ljung, H. Morin, N. Carraro et al., Computer simulations reveal properties of the cell-cell signaling network at the shoot apex in Arabidopsis, Proceedings of the National Academy of Sciences, vol.103, issue.5, pp.1627-1632, 2006.
DOI : 10.1073/pnas.0510130103

URL : https://hal.archives-ouvertes.fr/hal-00023247

N. Depege-fargeix, M. Javelle, P. Chambrier, N. Frangne, D. Gerentes et al., Functional characterization of the HD-ZIP IV transcription factor OCL1 from maize, Journal of Experimental Botany, vol.62, issue.1, pp.293-305, 2011.
DOI : 10.1093/jxb/erq267

T. Desprez, M. Juraniec, E. F. Crowell, H. Jouy, Z. Pochylova et al., Organization of cellulose synthase complexes involved in primary cell wall synthesis in Arabidopsis thaliana, Proceedings of the National Academy of Sciences, vol.104, issue.39, pp.15572-15577, 2007.
DOI : 10.1073/pnas.0706569104

URL : https://hal.archives-ouvertes.fr/hal-00198484

N. Dharmasiri, S. Dharmasiri, E. , and M. , The F-box protein TIR1 is an auxin receptor, Nature, vol.60, issue.7041, pp.441-445, 2005.
DOI : 10.1146/ANNUREV.BIOCHEM.70.1.503

N. Dharmasiri, S. Dharmasiri, D. Weijers, E. Lechner, M. Yamada et al., Plant Development Is Regulated by a Family of Auxin Receptor F Box Proteins, Developmental Cell, vol.9, issue.1, pp.109-119, 2005.
DOI : 10.1016/j.devcel.2005.05.014

D. Matteo, A. Giovane, A. Raiola, A. Camardella, L. Bonivento et al., Structural Basis for the Interaction between Pectin Methylesterase and a Specific Inhibitor Protein, THE PLANT CELL ONLINE, vol.17, issue.3, pp.849-858, 2005.
DOI : 10.1105/tpc.104.028886

E. Dominguez-puigjaner, I. , L. L. Vendrell, M. Prat, and S. , A cDNA Clone Highly Expressed in Ripe Banana Fruit Shows Homology to Pectate Lyases, Plant Physiology, vol.114, issue.3, pp.1071-1076, 1997.
DOI : 10.1104/pp.114.3.1071

Y. L. Dorokhov, E. V. Skurat, O. Y. Frolova, T. V. Gasanova, P. A. Ivanov et al., Role of the leader sequence in tobacco pectin methylesterase secretion, FEBS Letters, vol.23, issue.13, pp.3329-3334, 2006.
DOI : 10.1016/j.febslet.2006.04.090

Y. Eshed, S. F. Baum, and J. L. Bowman, Distinct Mechanisms Promote Polarity Establishment in Carpels of Arabidopsis, Cell, vol.99, issue.2, pp.199-209, 1999.
DOI : 10.1016/S0092-8674(00)81651-7

C. A. Esmon, A. G. Tinsley, K. Ljung, G. Sandberg, L. B. Hearne et al., A gradient of auxin and auxin-dependent transcription precedes tropic growth responses, Proceedings of the National Academy of Sciences, vol.103, issue.1, pp.236-241, 2006.
DOI : 10.1073/pnas.0507127103

R. M. Feldman, C. C. Correll, K. B. Kaplan, and R. J. Deshaies, A Complex of Cdc4p, Skp1p, and Cdc53p/Cullin Catalyzes Ubiquitination of the Phosphorylated CDK Inhibitor Sic1p, Cell, vol.91, issue.2, pp.221-230, 1997.
DOI : 10.1016/S0092-8674(00)80404-3

M. A. Ferguson and A. F. Williams, Cell-Surface Anchoring of Proteins via Glycosyl-Phosphatidylinositol Structures, Annual Review of Biochemistry, vol.57, issue.1, pp.285-320, 1988.
DOI : 10.1146/annurev.bi.57.070188.001441

J. Friml, A. Vieten, M. Sauer, D. Weijers, H. Schwarz et al., Efflux-dependent auxin gradients establish the apical???basal axis of Arabidopsis, Nature, vol.426, issue.6963, pp.147-153, 2003.
DOI : 10.1038/nature02085

J. Friml, X. Yang, M. Michniewicz, D. Weijers, A. Quint et al., A PINOID-Dependent Binary Switch in Apical-Basal PIN Polar Targeting Directs Auxin Efflux, Science, vol.306, issue.5697, pp.862-865, 2004.
DOI : 10.1126/science.1100618

L. Galweiler, C. Guan, A. Muller, E. Wisman, K. Mendgen et al., Regulation of Polar Auxin Transport by AtPIN1 in Arabidopsis Vascular Tissue, Science, vol.282, issue.5397, pp.2226-2230, 1998.
DOI : 10.1126/science.282.5397.2226

M. Geisler, J. J. Blakeslee, R. Bouchard, O. R. Lee, V. Vincenzetti et al., Cellular efflux of auxin catalyzed by the Arabidopsis MDR/PGP transporter AtPGP1, The Plant Journal, vol.304, issue.2, pp.179-194, 2005.
DOI : 10.1111/j.1365-313X.2005.02519.x

N. Geshi, B. Jorgensen, and P. Ulvskov, Subcellular localization and topology of ???(1?4)galactosyltransferase that elongates ???(1?4)galactan side chains in rhamnogalacturonan???I in potato, Planta, vol.218, issue.5, pp.862-868, 2004.
DOI : 10.1007/s00425-003-1168-3

A. Giovane, C. Balestrieri, L. Quagliuolo, D. Castaldo, and L. Servillo, A Glycoprotein Inhibitor of Pectin Methylesterase in Kiwi Fruit. Purification by Affinity Chromatography and Evidence of a Ripening-Related Precursor, European Journal of Biochemistry, vol.281, issue.3, pp.926-929, 1995.
DOI : 10.1016/0014-5793(72)80641-0

A. Giovane, L. Servillo, C. Balestrieri, A. Raiola, R. D-'avino et al., Pectin methylesterase inhibitor, Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, vol.1696, issue.2, pp.245-252, 2004.
DOI : 10.1016/j.bbapap.2003.08.011

E. Glawischnig, B. G. Hansen, C. E. Olsen, and B. A. Halkier, Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis, Proceedings of the National Academy of Sciences, vol.101, issue.21, pp.8245-8250, 2004.
DOI : 10.1073/pnas.0305876101

F. Goubet and D. Mohnen, Solubilization and Partial Characterization of Homogalacturonan-Methyltransferase from Microsomal Membranes of Suspension-Cultured Tobacco Cells, Plant Physiology, vol.121, issue.1, pp.281-290, 1999.
DOI : 10.1104/pp.121.1.281

W. M. Gray, J. C. Del-pozo, L. Walker, L. Hobbie, E. Risseeuw et al., Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana, Genes & Development, vol.13, issue.13, pp.1678-1691, 1999.
DOI : 10.1101/gad.13.13.1678

W. M. Gray, S. Kepinski, D. Rouse, O. Leyser, E. et al., Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins, Nature, vol.414, issue.6861, pp.271-276, 2001.
DOI : 10.1038/35104500

T. J. Guilfoyle, H. , and G. , Auxin response factors, Current Opinion in Plant Biology, vol.10, issue.5, pp.453-460, 2007.
DOI : 10.1016/j.pbi.2007.08.014

B. A. Halkier and J. And-gershenzon, BIOLOGY AND BIOCHEMISTRY OF GLUCOSINOLATES, Annual Review of Plant Biology, vol.57, issue.1, pp.303-333, 2006.
DOI : 10.1146/annurev.arplant.57.032905.105228

O. Hamant, J. Traas, and A. Boudaoud, Regulation of shape and patterning in plant development, Current Opinion in Genetics & Development, vol.20, issue.4, pp.454-459, 2010.
DOI : 10.1016/j.gde.2010.04.009

URL : https://hal.archives-ouvertes.fr/hal-00521487

C. S. Hardtke and T. Berleth, The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development, The EMBO Journal, vol.17, issue.5, pp.1405-1411, 1998.
DOI : 10.1093/emboj/17.5.1405

M. G. Heisler, O. Hamant, P. Krupinski, M. Uyttewaal, C. Ohno et al., Alignment between PIN1 Polarity and Microtubule Orientation in the Shoot Apical Meristem Reveals a Tight Coupling between Morphogenesis and Auxin Transport, PLoS Biology, vol.41, issue.10, 2010.
DOI : 10.1371/journal.pbio.1000516.s002

M. G. Heisler, C. Ohno, P. Das, P. Sieber, G. V. Reddy et al., Patterns of Auxin Transport and Gene Expression during Primordium Development Revealed by Live Imaging of the Arabidopsis Inflorescence Meristem, Current Biology, vol.15, issue.21, pp.1899-1911, 2005.
DOI : 10.1016/j.cub.2005.09.052

H. Hellmann, L. Hobbie, A. Chapman, S. Dharmasiri, N. Dharmasiri et al., Arabidopsis AXR6 encodes CUL1 implicating SCF E3 ligases in auxin regulation of embryogenesis, The EMBO Journal, vol.22, issue.13, pp.3314-3325, 2003.
DOI : 10.1093/emboj/cdg335

T. Hewezi, P. Howe, T. R. Maier, R. S. Hussey, M. G. Mitchum et al., Cellulose Binding Protein from the Parasitic Nematode Heterodera schachtii Interacts with Arabidopsis Pectin Methylesterase: Cooperative Cell Wall Modification during Parasitism, THE PLANT CELL ONLINE, vol.20, issue.11, pp.3080-3093, 2008.
DOI : 10.1105/tpc.108.063065

M. Hothorn, I. Angelo, J. A. Marquez, S. Greiner, and K. Scheffzek, The Invertase Inhibitor Nt-CIF from Tobacco: A Highly Thermostable Four-helix Bundle with an Unusual N-terminal Extension, Journal of Molecular Biology, vol.335, issue.4, pp.987-995, 2004.
DOI : 10.1016/j.jmb.2003.10.066

M. Hothorn, S. Wolf, P. Aloy, S. Greiner, and K. Scheffzek, Structural Insights into the Target Specificity of Plant Invertase and Pectin Methylesterase Inhibitory Proteins, THE PLANT CELL ONLINE, vol.16, issue.12, pp.3437-3447, 2004.
DOI : 10.1105/tpc.104.025684

A. K. Hull, R. Vij, C. , and J. L. , Arabidopsis cytochrome P450s that catalyze the first step of tryptophan-dependent indole-3-acetic acid biosynthesis, Proceedings of the National Academy of Sciences, vol.97, issue.5, pp.2379-2384, 2000.
DOI : 10.1073/pnas.040569997

C. Hunter, M. R. Willmann, G. Wu, M. Yoshikawa, L. Gutierrez-nava et al., Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis, Development, vol.133, issue.15, pp.2973-2981, 2006.
DOI : 10.1242/dev.02491

T. Ishii, O-Acetylated Oligosaccharides from Pectins of Potato Tuber Cell Walls, Plant Physiology, vol.113, issue.4, pp.1265-1272, 1997.
DOI : 10.1104/pp.113.4.1265

M. Ishimaru, D. L. Smith, K. C. Gross, and S. Kobayashi, Expression of three expansin genes during development and maturation of Kyoho grape berries, Journal of Plant Physiology, vol.164, issue.12, pp.1675-1682, 2007.
DOI : 10.1016/j.jplph.2006.07.017

R. G. Jackson, M. Kowalczyk, Y. Li, G. Higgins, J. Ross et al., gene encoding a glucosyltransferase of indole-3-acetic acid: phenotypic characterisation of transgenic lines, The Plant Journal, vol.99, issue.4, pp.573-583, 2002.
DOI : 10.1046/j.1365-313X.2002.01445.x

K. Kai, J. Horita, K. Wakasa, and H. Miyagawa, Three oxidative metabolites of indole-3-acetic acid from Arabidopsis thaliana, Phytochemistry, vol.68, issue.12, pp.1651-1663, 2007.
DOI : 10.1016/j.phytochem.2007.04.030

T. Kamura, D. M. Koepp, M. N. Conrad, D. Skowyra, R. J. Moreland et al., Rbx1, a Component of the VHL Tumor Suppressor Complex and SCF Ubiquitin Ligase, Science, vol.284, issue.5414, pp.657-661, 1999.
DOI : 10.1126/science.284.5414.657

E. Kanaya, N. Nakajima, and K. Okada, Is Reduced by EDTA, Journal of Biological Chemistry, vol.277, issue.14, pp.11957-11964, 2002.
DOI : 10.1074/jbc.M108889200

S. Kang, K. Kang, K. Lee, and K. Back, Characterization of rice tryptophan decarboxylases and their direct involvement in serotonin biosynthesis in transgenic rice, Planta, vol.296, issue.1, pp.263-272, 2007.
DOI : 10.1007/s00425-007-0614-z

Y. Kapulnik, N. Resnick, E. Mayzlish-gati, Y. Kaplan, S. Wininger et al., Strigolactones interact with ethylene and auxin in regulating root-hair elongation in Arabidopsis, Journal of Experimental Botany, vol.62, issue.8, pp.2915-2924, 2011.
DOI : 10.1093/jxb/erq464

H. Kende, K. Bradford, D. Brummell, H. T. Cho, D. Cosgrove et al., Nomenclature for members of the expansin superfamily of genes and proteins, Plant Molecular Biology, vol.16, issue.3, pp.311-314, 2004.
DOI : 10.1007/s11103-004-0158-6

S. Kepinski and O. Leyser, The Arabidopsis F-box protein TIR1 is an auxin receptor, Nature, vol.99, issue.7041, pp.446-451, 2005.
DOI : 10.1101/gr.980303

J. Kim, K. Harter, and A. Theologis, Protein-protein interactions among the Aux/IAA proteins, Proceedings of the National Academy of Sciences, vol.94, issue.22, pp.11786-11791, 1997.
DOI : 10.1073/pnas.94.22.11786

J. I. Kim, A. Sharkhuu, J. B. Jin, P. Li, J. C. Jeong et al., yucca6, a Dominant Mutation in Arabidopsis, Affects Auxin Accumulation and Auxin-Related Phenotypes, PLANT PHYSIOLOGY, vol.145, issue.3, pp.722-735, 2007.
DOI : 10.1104/pp.107.104935

T. Kosuge, M. G. Heskett, W. , and E. E. , Microbial synthesis and degradation of indole-3-acetic acid. I. The conversion of L-tryptophan to indole-3-acetamide by an enzyme system from Pseudomonas savastanoi, J Biol Chem, vol.241, pp.3738-3744, 1966.

M. Kowalczyk and G. Sandberg, Quantitative Analysis of Indole-3-Acetic Acid Metabolites in Arabidopsis, PLANT PHYSIOLOGY, vol.127, issue.4, pp.1845-1853, 2001.
DOI : 10.1104/pp.010525

M. Laskowski, S. Biller, K. Stanley, T. Kajstura, and R. Prusty, Expression Profiling of Auxin-treated Arabidopsis Roots: Toward a Molecular Analysis of Lateral Root Emergence, Plant and Cell Physiology, vol.47, issue.6, pp.788-792, 2006.
DOI : 10.1093/pcp/pcj043

D. K. Lee, J. H. Ahn, S. K. Song, Y. D. Choi, L. et al., Expression of an Expansin Gene Is Correlated with Root Elongation in Soybean, PLANT PHYSIOLOGY, vol.131, issue.3, pp.985-997, 2003.
DOI : 10.1104/pp.009902

A. Lehner, F. Dardelle, O. Soret-morvan, P. Lerouge, A. Driouich et al., pollen tube and pistil, Plant Signaling & Behavior, vol.7, issue.10, pp.1282-1285, 2010.
DOI : 10.1093/jxb/erg015

B. Levitin, D. Richter, I. Markovich, and M. Zik, Arabinogalactan proteins 6 and 11 are required for stamen and pollen function in Arabidopsis, The Plant Journal, vol.15, issue.3, pp.351-363, 2008.
DOI : 10.1111/j.1365-313X.2008.03607.x

H. M. Leyser, F. B. Pickett, S. Dharmasiri, E. , and M. , Mutations in the AXR3 gene of Arabidopsis result in altered auxin response including ectopic expression from the SAUR-AC1 promoter, The Plant Journal, vol.10, issue.3, pp.403-413, 1996.
DOI : 10.1046/j.1365-313x.1996.10030403.x

M. Li, W. Xu, W. Yang, Z. Kong, and Y. Xue, Genome-Wide Gene Expression Profiling Reveals Conserved and Novel Molecular Functions of the Stigma in Rice, PLANT PHYSIOLOGY, vol.144, issue.4, pp.1797-1812, 2007.
DOI : 10.1104/pp.107.101600

F. Liners, J. J. Letesson, C. Didembourg, V. Cutsem, and P. , Monoclonal Antibodies against Pectin: Recognition of a Conformation Induced by Calcium, PLANT PHYSIOLOGY, vol.91, issue.4, pp.1419-1424, 1989.
DOI : 10.1104/pp.91.4.1419

E. Liscum, R. , and J. W. , Genetics of Aux/IAA and ARF action in plant growth and development, Plant Mol Biol, vol.49, pp.387-400, 2002.
DOI : 10.1007/978-94-010-0377-3_10

Z. B. Liu, T. Ulmasov, X. Shi, G. Hagen, and T. J. Guilfoyle, Soybean GH3 Promoter Contains Multiple Auxin-Inducible Elements, THE PLANT CELL ONLINE, vol.6, issue.5, pp.645-657, 1994.
DOI : 10.1105/tpc.6.5.645

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC160465

R. Louvet, E. Cavel, L. Gutierrez, S. Guenin, D. Roger et al., Comprehensive expression profiling of the pectin methylesterase gene family during silique development in Arabidopsis thaliana, Planta, vol.138, issue.4, pp.782-791, 2006.
DOI : 10.1007/s00425-006-0261-9

J. Ludwig-muller, A. Vertocnik, T. , and C. D. , Analysis of indole-3-butyric acid-induced adventitious root formation on Arabidopsis stem segments, Journal of Experimental Botany, vol.56, issue.418, pp.2095-2105, 2005.
DOI : 10.1093/jxb/eri208

J. Ludwig-muller, A. Walz, J. P. Slovin, E. Epstein, J. D. Cohen et al., Overexpression of Maize IAGLU in Arabidopsis thaliana Alters Plant Growth and Sensitivity to IAA but not IBA and 2,4-D, Journal of Plant Growth Regulation, vol.118, issue.2, pp.4-127, 2005.
DOI : 10.1073/pnas.032450399

C. Luschnig, Auxin transport: Why plants like to think BIG, Current Biology, vol.11, issue.20, pp.831-833, 2001.
DOI : 10.1016/S0960-9822(01)00497-3

URL : http://doi.org/10.1016/s0960-9822(01)00497-3

C. Luschnig, R. A. Gaxiola, P. Grisafi, and G. R. Fink, EIR1, a root-specific protein involved in auxin transport, is required for gravitropism in Arabidopsis??thaliana, Genes & Development, vol.12, issue.14, pp.2175-2187, 1998.
DOI : 10.1101/gad.12.14.2175

M. A. Lynch and L. A. Staehelin, Domain-specific and cell type-specific localization of two types of cell wall matrix polysaccharides in the clover root tip, The Journal of Cell Biology, vol.118, issue.2, pp.467-479, 1992.
DOI : 10.1083/jcb.118.2.467

P. C. Ma, M. A. Rould, H. Weintraub, and C. O. Pabo, Crystal structure of MyoD bHLH domain-DNA complex: Perspectives on DNA recognition and implications for transcriptional activation, Cell, vol.77, issue.3, pp.451-459, 1994.
DOI : 10.1016/0092-8674(94)90159-7

K. K. Mandadi, A. Misra, S. Ren, and T. D. Mcknight, BT2, a BTB Protein, Mediates Multiple Responses to Nutrients, Stresses, and Hormones in Arabidopsis, PLANT PHYSIOLOGY, vol.150, issue.4, pp.1930-1939, 2009.
DOI : 10.1104/pp.109.139220

M. Fdos, S. Memelink, J. Offringa, and R. , Auxin-induced, SCF(TIR1)- mediated poly-ubiquitination marks AUX/IAA proteins for degradation, Plant J, vol.59, pp.100-109, 2009.

A. Marchant, R. Bhalerao, I. Casimiro, J. Eklof, P. J. Casero et al., AUX1 Promotes Lateral Root Formation by Facilitating Indole-3-Acetic Acid Distribution between Sink and Source Tissues in the Arabidopsis Seedling, THE PLANT CELL ONLINE, vol.14, issue.3, pp.589-597, 2002.
DOI : 10.1105/tpc.010354

E. Marin, V. Jouannet, A. Herz, A. S. Lokerse, D. Weijers et al., Targets Define an Autoregulatory Network Quantitatively Regulating Lateral Root Growth, The Plant Cell, vol.22, issue.4, pp.1104-1117, 2010.
DOI : 10.1105/tpc.109.072553

URL : https://hal.archives-ouvertes.fr/hal-00856226

O. Markovic and H. Jornvall, Disulfide bridges in tomato pectinesterase: Variations from pectinesterases of other species; conservation of possible active site segments, Protein Science, vol.151, issue.10, pp.1288-1292, 1992.
DOI : 10.1002/pro.5560011007

C. R. Mcclung, Plant Circadian Rhythms, THE PLANT CELL ONLINE, vol.18, issue.4, pp.792-803, 2006.
DOI : 10.1105/tpc.106.040980

B. A. Mckenna, T. M. Nicholson, J. B. Wehr, and N. W. Menzies, Effects of Ca, Cu, Al and La on pectin gel strength: implications for plant cell walls, Carbohydrate Research, vol.345, issue.9, pp.1174-1179, 2010.
DOI : 10.1016/j.carres.2010.03.044

S. Mcqueen-mason and D. J. Cosgrove, Disruption of hydrogen bonding between plant cell wall polymers by proteins that induce wall extension., Proceedings of the National Academy of Sciences, vol.91, issue.14, pp.6574-6578, 1994.
DOI : 10.1073/pnas.91.14.6574

S. J. Mcqueen-mason and D. J. Cosgrove, Expansin Mode of Action on Cell Walls (Analysis of Wall Hydrolysis, Stress Relaxation, and Binding), Plant Physiology, vol.107, issue.1, pp.87-100, 1995.
DOI : 10.1104/pp.107.1.87

R. J. Meister, H. Oldenhof, J. L. Bowman, and C. S. Gasser, Multiple Protein Regions Contribute to Differential Activities of YABBY Proteins inReproductive Development, PLANT PHYSIOLOGY, vol.137, issue.2, pp.651-662, 2005.
DOI : 10.1104/pp.104.055368

Y. Miao, H. Y. Li, J. Shen, J. Wang, and L. Jiang, QUASIMODO 3 (QUA3) is a putative homogalacturonan methyltransferase regulating cell wall biosynthesis in Arabidopsis suspension-cultured cells, Journal of Experimental Botany, vol.62, issue.14, 2011.
DOI : 10.1093/jxb/err211

P. Milani, M. Gholamirad, J. Traas, A. Arneodo, A. Boudaoud et al., In???vivo analysis of local wall stiffness at the shoot apical meristem in Arabidopsis using atomic force microscopy, The Plant Journal, vol.334, issue.6, pp.1116-1123, 2011.
DOI : 10.1111/j.1365-313X.2011.04649.x

C. L. Mitchell, H. , and V. R. , Biochemical defects in eight SRY missense mutations causing XY gonadal dysgenesis, Molecular Genetics and Metabolism, vol.77, issue.3, pp.217-225, 2002.
DOI : 10.1016/S1096-7192(02)00165-8

P. J. Moore, K. M. Swords, M. A. Lynch, and L. A. Staehelin, Spatial organization of the assembly pathways of glycoproteins and complex polysaccharides in the Golgi apparatus of plants, The Journal of Cell Biology, vol.112, issue.4, pp.589-602, 1991.
DOI : 10.1083/jcb.112.4.589

G. Mouille, M. C. Ralet, C. Cavelier, C. Eland, D. Effroy et al., Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain, The Plant Journal, vol.136, issue.4, pp.605-614, 2007.
DOI : 10.1111/j.1365-313X.2007.03086.x

G. Mouille, S. Robin, M. Lecomte, S. Pagant, and H. Hofte, cell wall mutants using Fourier-Transform InfraRed (FT-IR) microspectroscopy, The Plant Journal, vol.12, issue.3, pp.393-404, 2003.
DOI : 10.1046/j.1365-313X.2003.01807.x

A. M. Moustacas, J. Nari, M. Borel, G. Noat, R. et al., Pectin methylesterase, metal ions and plant cell-wall extension. The role of metal ions in plant cell-wall extension, Biochemical Journal, vol.279, issue.2, pp.279-351, 1991.
DOI : 10.1042/bj2790351

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1151612

J. Mravec, P. Skupa, A. Bailly, K. Hoyerova, P. Krecek et al., Subcellular homeostasis of phytohormone auxin is mediated by the ER-localized PIN5 transporter, Nature, vol.19, issue.7250, pp.1136-1140, 2009.
DOI : 10.1038/nature08066

A. Muller, C. Guan, L. Galweiler, P. Tanzler, P. Huijser et al., AtPIN2 defines a locus of Arabidopsis for root gravitropism control, The EMBO Journal, vol.91, issue.23, pp.6903-6911, 1998.
DOI : 10.1093/emboj/17.23.6903

M. Nafisi, S. Goregaoker, C. J. Botanga, E. Glawischnig, C. E. Olsen et al., Cytochrome P450 Monooxygenase 71A13 Catalyzes the Conversion of Indole-3-Acetaldoxime in Camalexin Synthesis, The Plant Cell, vol.19, issue.6, pp.2039-2052, 2007.
DOI : 10.1105/tpc.107.051383

P. Nagpal, C. M. Ellis, H. Weber, S. E. Ploense, L. S. Barkawi et al., Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation, Development, vol.132, issue.18, pp.4107-4118, 2005.
DOI : 10.1242/dev.01955

P. Nagpal, L. M. Walker, J. C. Young, A. Sonawala, C. Timpte et al., Encodes a Member of the Aux/IAA Protein Family, Plant Physiology, vol.123, issue.2, pp.563-574, 2000.
DOI : 10.1104/pp.123.2.563

J. Nari, G. Noat, G. Diamantidis, M. Woudstra, R. et al., Electrostatic effects and the dynamics of enzyme reactions at the surface of plant cells. 3. Interplay between limited cell-wall autolysis, pectin methyl esterase activity and electrostatic effects in soybean cell walls, European Journal of Biochemistry, vol.3, issue.1, pp.199-202, 1986.
DOI : 10.1016/0014-4827(68)90403-5

J. L. Nemhauser, L. J. Feldman, and P. C. Zambryski, Auxin and ETTIN in Arabidopsis gynoecium morphogenesis, Development, vol.127, pp.3877-3888, 2000.

J. L. Nemhauser, F. Hong, C. , and J. , Different Plant Hormones Regulate Similar Processes through Largely Nonoverlapping Transcriptional Responses, Cell, vol.126, issue.3, pp.467-475, 2006.
DOI : 10.1016/j.cell.2006.05.050

URL : http://doi.org/10.1016/j.cell.2006.05.050

K. Nishiyama, M. Guis, J. K. Rose, Y. Kubo, K. A. Bennett et al., Ethylene regulation of fruit softening and cell wall disassembly in Charentais melon, Journal of Experimental Botany, vol.58, issue.6, pp.1281-1290, 2007.
DOI : 10.1093/jxb/erl283

B. Noh, A. S. Murphy, and E. P. Spalding, Multidrug Resistance-like Genes of Arabidopsis Required for Auxin Transport and Auxin-Mediated Development, THE PLANT CELL ONLINE, vol.13, issue.11, pp.2441-2454, 2001.
DOI : 10.1105/tpc.13.11.2441

J. Normanly, J. D. Cohen, and G. R. Fink, Arabidopsis thaliana auxotrophs reveal a tryptophan-independent biosynthetic pathway for indole-3-acetic acid., Proceedings of the National Academy of Sciences, vol.90, issue.21, pp.10355-10359, 1993.
DOI : 10.1073/pnas.90.21.10355

J. Normanly, P. Grisafi, G. R. Fink, and B. Bartel, Arabidopsis Mutants Resistant to the Auxin Effects of Indole-3-Acetonitrile Are Defective in the Nitrilase Encoded by the NIT1 Gene, THE PLANT CELL ONLINE, vol.9, issue.10, pp.1781-1790, 1997.
DOI : 10.1105/tpc.9.10.1781

K. J. Nunan and H. V. Scheller, Solubilization of an Arabinan Arabinosyltransferase Activity from Mung Bean Hypocotyls, PLANT PHYSIOLOGY, vol.132, issue.1, pp.331-342, 2003.
DOI : 10.1104/pp.102.019406

T. Ohta, J. J. Michel, A. J. Schottelius, and Y. Xiong, ROC1, a Homolog of APC11, Represents a Family of Cullin Partners with an Associated Ubiquitin Ligase Activity, Molecular Cell, vol.3, issue.4, pp.535-541, 1999.
DOI : 10.1016/S1097-2765(00)80482-7

K. Okada, Y. Shimura, . Root-tip, . In, . Seedlings et al., Reversible Root Tip Rotation in Arabidopsis Seedlings Induced by Obstacle-Touching Stimulus, Science, vol.250, issue.4978, pp.274-276, 1990.
DOI : 10.1126/science.250.4978.274

K. Okada, J. Ueda, M. K. Komaki, C. J. Bell, and Y. Shimura, Requirement of the Auxin Polar Transport System in Early Stages of Arabidopsis Floral Bud Formation, THE PLANT CELL ONLINE, vol.3, issue.7, pp.677-684, 1991.
DOI : 10.1105/tpc.3.7.677

A. Ostin, N. Ilic, and J. D. Cohen, An in Vitro System from Maize Seedlings for Tryptophan-Independent Indole-3-Acetic Acid Biosynthesis, Plant Physiology, vol.119, issue.1, pp.173-178, 1999.
DOI : 10.1104/pp.119.1.173

A. Ostin, M. Kowalyczk, R. P. Bhalerao, and G. Sandberg, Metabolism of Indole-3-Acetic Acid in Arabidopsis, Plant Physiology, vol.118, issue.1, pp.285-296, 1998.
DOI : 10.1104/pp.118.1.285

F. Ouellet, P. J. Overvoorde, and A. Theologis, IAA17/AXR3: Biochemical Insight into an Auxin Mutant Phenotype, THE PLANT CELL ONLINE, vol.13, issue.4, pp.829-841, 2001.
DOI : 10.1105/tpc.13.4.829

J. Ouyang, X. Shao, L. , and J. , Indole-3-glycerol phosphate, a branchpoint of indole-3-acetic acid biosynthesis from the tryptophan biosynthetic pathway in Arabidopsis thaliana, The Plant Journal, vol.254, issue.3, pp.327-333, 2000.
DOI : 10.1104/pp.118.4.1389

P. J. Overvoorde, Y. Okushima, J. M. Alonso, A. Chan, C. Chang et al., Functional Genomic Analysis of the AUXIN/INDOLE-3-ACETIC ACID Gene Family Members in Arabidopsis thaliana, THE PLANT CELL ONLINE, vol.17, issue.12, pp.3282-3300, 2005.
DOI : 10.1105/tpc.105.036723

S. G. Palusa, M. Golovkin, S. B. Shin, D. N. Richardson, and A. S. Reddy, Organ-specific, developmental, hormonal and stress regulation of expression of putative pectate lyase genes in Arabidopsis, New Phytologist, vol.5, issue.3, pp.537-550, 2007.
DOI : 10.1093/bioinformatics/17.9.847

M. H. Park, Y. Suzuki, M. Chono, J. P. Knox, Y. et al., CsAGP1, a Gibberellin-Responsive Gene from Cucumber Hypocotyls, Encodes a Classical Arabinogalactan Protein and Is Involved in Stem Elongation, PLANT PHYSIOLOGY, vol.131, issue.3, pp.1450-1459, 2003.
DOI : 10.1104/pp.015628

G. Parry, A. Delbarre, A. Marchant, R. Swarup, R. Napier et al., Novel auxin transport inhibitors phenocopy the auxin influx carrier mutation aux1, The Plant Journal, vol.39, issue.4, pp.399-406, 2001.
DOI : 10.1046/j.1365-313x.2001.00970.x

URL : https://hal.archives-ouvertes.fr/hal-00154472

A. Peaucelle, R. Louvet, J. N. Johansen, H. Hofte, P. Laufs et al., Arabidopsis Phyllotaxis Is Controlled by the Methyl-Esterification Status of Cell-Wall Pectins, Current Biology, vol.18, issue.24, 1943.
DOI : 10.1016/j.cub.2008.10.065

I. Pekker, J. P. Alvarez, and Y. Eshed, Auxin Response Factors Mediate Arabidopsis Organ Asymmetry via Modulation of KANADI Activity, THE PLANT CELL ONLINE, vol.17, issue.11, pp.2899-2910, 2005.
DOI : 10.1105/tpc.105.034876

S. Pelaz, G. S. Ditta, E. Baumann, E. Wisman, Y. et al., B and C floral organ identity functions require SEPALLATA MADS-box genes, Nature, vol.405, issue.6783, pp.200-203, 2000.
DOI : 10.1038/35012103

L. G. Pereira, S. Coimbra, H. Oliveira, L. Monteiro, and M. Sottomayor, Expression of arabinogalactan protein genes in pollen tubes of Arabidopsis thaliana, Planta, vol.58, issue.2, pp.374-380, 2006.
DOI : 10.1007/s00425-005-0137-4

J. M. Perez-perez, H. Candela, P. Robles, G. Lopez-torrejon, J. C. Del-pozo et al., A Role for AUXIN RESISTANT3 in the Coordination of Leaf Growth, Plant and Cell Physiology, vol.51, issue.10, pp.1661-1673, 2010.
DOI : 10.1093/pcp/pcq123

J. Petrasek, J. Mravec, R. Bouchard, J. J. Blakeslee, M. Abas et al., PIN Proteins Perform a Rate-Limiting Function in Cellular Auxin Efflux, Science, vol.312, issue.5775, pp.914-918, 2006.
DOI : 10.1126/science.1123542

M. W. Pfaffl, A new mathematical model for relative quantification in real-time RT-PCR, Nucleic Acids Research, vol.29, issue.9, p.45, 2001.
DOI : 10.1093/nar/29.9.e45

J. Pfluger and P. Zambryski, The role of SEUSS in auxin response and floral organ patterning, Development, vol.131, issue.19, pp.4697-4707, 2004.
DOI : 10.1242/dev.01306

S. Pien, J. Wyrzykowska, S. Mcqueen-mason, C. Smart, and A. Fleming, Local expression of expansin induces the entire process of leaf development and modifies leaf shape, Proceedings of the National Academy of Sciences of the United States of America 98, pp.11812-11817, 2001.
DOI : 10.1073/pnas.191380498

S. Pollmann, P. Duchting, and E. W. Weiler, Tryptophan-dependent indole-3-acetic acid biosynthesis by ???IAA-synthase??? proceeds via indole-3-acetamide, Phytochemistry, vol.70, issue.4, pp.523-531, 2009.
DOI : 10.1016/j.phytochem.2009.01.021

J. T. Powell and K. Brew, Glycosyltransferases in the Golgi membranes of onion stem, Biochemical Journal, vol.142, issue.2, pp.203-209, 1974.
DOI : 10.1042/bj1420203

G. K. Przemeck, J. Mattsson, C. S. Hardtke, Z. R. Sung, and T. Berleth, Studies on the role of the Arabidopsis gene MONOPTEROS in vascular development and plant cell axialization, Planta, vol.200, issue.2, pp.229-237, 1996.
DOI : 10.1007/BF00208313

E. R. Radwanski and R. L. Last, Tryptophan Biosynthesis and Metabolism: Biochemical and Molecular Genetics, THE PLANT CELL ONLINE, vol.7, issue.7, pp.921-934, 1995.
DOI : 10.1105/tpc.7.7.921

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC160888

J. A. Ramos, N. Zenser, O. Leyser, C. , and J. , Rapid Degradation of Auxin/Indoleacetic Acid Proteins Requires Conserved Amino Acids of Domain II and Is Proteasome Dependent, THE PLANT CELL ONLINE, vol.13, issue.10, pp.2349-2360, 2001.
DOI : 10.1105/tpc.13.10.2349

J. A. Raven, . Of-indoleacetic-acid, . In-plant-cells, . In, . To et al., TRANSPORT OF INDOLEACETIC ACID IN PLANT CELLS IN RELATION TO pH AND ELECTRICAL POTENTIAL GRADIENTS, AND ITS SIGNIFICANCE FOR POLAR IAA TRANSPORT, New Phytologist, vol.49, issue.2, pp.163-172, 1975.
DOI : 10.1146/annurev.pp.18.060167.002205

J. Ray, J. Knapp, D. Grierson, C. Bird, and W. Schuch, Identification and sequence determination of a cDNA clone for tomato pectin esterase, European Journal of Biochemistry, vol.7, issue.1, pp.119-124, 1988.
DOI : 10.1016/0005-2744(73)90035-1

H. S. Robert, A. Quint, D. Brand, A. Vivian-smith, and R. Offringa, BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development, The Plant Journal, vol.136, issue.Suppl, 2008.
DOI : 10.1111/j.1365-313X.2008.03764.x

C. P. Romano, P. R. Robson, H. Smith, M. Estelle, K. et al., Transgene-mediated auxin overproduction in Arabidopsis: hypocotyl elongation phenotype and interactions with the hy6-1 hypocotyl elongation and axr1 auxin-resistant mutants, Plant Molecular Biology, vol.102, issue.6, pp.1071-1083, 1995.
DOI : 10.1007/BF00020881

H. A. Ross, K. M. Wright, G. J. Mcdougall, A. G. Roberts, S. N. Chapman et al., Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture, Journal of Experimental Botany, vol.62, issue.1, pp.371-381, 2011.
DOI : 10.1093/jxb/erq280

D. Rouse, P. Mackay, P. Stirnberg, M. Estelle, and O. Leyser, Changes in Auxin Response from Mutations in an AUX/IAA Gene, Science, vol.279, issue.5355, pp.1371-1373, 1998.
DOI : 10.1126/science.279.5355.1371

P. H. Rubery and S. , Carrier-mediated auxin transport, Planta, vol.16, issue.2, pp.101-121, 1974.
DOI : 10.1007/BF00388387

M. Ruegger, E. Dewey, W. M. Gray, L. Hobbie, J. Turner et al., The TIR1 protein of Arabidopsis functions in auxin response and is related to human SKP2 and yeast??Grr1p, Genes & Development, vol.12, issue.2, pp.198-207, 1998.
DOI : 10.1101/gad.12.2.198

D. Santelia, V. Vincenzetti, E. Azzarello, L. Bovet, Y. Fukao et al., MDR-like ABC transporter AtPGP4 is involved in auxin-mediated lateral root and root hair development, FEBS Letters, vol.10, issue.24, pp.5399-5406, 2005.
DOI : 10.1016/j.febslet.2005.08.061

N. Santiago-domenech, S. Jimenez-bemudez, A. J. Matas, J. K. Rose, J. Munoz-blanco et al., Antisense inhibition of a pectate lyase gene supports a role for pectin depolymerization in strawberry fruit softening, Journal of Experimental Botany, vol.59, issue.10, pp.2769-2779, 2008.
DOI : 10.1093/jxb/ern142

R. Sarojam, P. G. Sappl, A. Goldshmidt, I. Efroni, S. K. Floyd et al., Differentiating Arabidopsis Shoots from Leaves by Combined YABBY Activities, THE PLANT CELL ONLINE, vol.22, issue.7, pp.2113-2130, 2010.
DOI : 10.1105/tpc.110.075853

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2929102

P. Schopfer, A. Liszkay, M. Bechtold, G. Frahry, and A. Wagner, Evidence that hydroxyl radicals mediate auxin-induced extension growth, Planta, vol.214, issue.6, pp.821-828, 2002.
DOI : 10.1007/s00425-001-0699-8

J. H. Seol, R. M. Feldman, W. Zachariae, A. Shevchenko, C. C. Correll et al., Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34, Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34, pp.1614-1626, 1999.
DOI : 10.1101/gad.13.12.1614

A. Sessions, J. L. Nemhauser, A. Mccoll, J. L. Roe, K. A. Feldmann et al., ETTIN patterns the Arabidopsis floral meristem and reproductive organs, Development, vol.124, pp.4481-4491, 1997.

R. Sessions, Arabidopsis (Brassicaceae) Flower Development and Gynoecium Patterning in Wild Type and Ettin Mutants, American Journal of Botany, vol.84, issue.9, 1179.
DOI : 10.2307/2446041

R. A. Sessions and P. C. Zambryski, Arabidopsis gynoecium structure in the wild and in ettin mutants, Development, vol.121, pp.1519-1532, 1995.

P. Sieber, M. Petrascheck, A. Barberis, and K. Schneitz, Organ Polarity in Arabidopsis. NOZZLE Physically Interacts with Members of the YABBY Family, PLANT PHYSIOLOGY, vol.135, issue.4, pp.2172-2185, 2004.
DOI : 10.1104/pp.104.040154

K. R. Siegfried, Y. Eshed, S. F. Baum, D. Otsuga, G. N. Drews et al., Members of the YABBY gene family specify abaxial cell fate in Arabidopsis, Development, vol.126, pp.4117-4128, 1999.

J. Sitaraman, M. Bui, and Z. Liu, LEUNIG_HOMOLOG and LEUNIG Perform Partially Redundant Functions during Arabidopsis Embryo and Floral Development, PLANT PHYSIOLOGY, vol.147, issue.2, pp.672-681, 2008.
DOI : 10.1104/pp.108.115923

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2409011

D. R. Smyth, J. L. Bowman, and E. M. Meyerowitz, Early Flower Development in Arabidopsis, THE PLANT CELL ONLINE, vol.2, issue.8, pp.755-767, 1990.
DOI : 10.1105/tpc.2.8.755

P. E. Staswick, The Tryptophan Conjugates of Jasmonic and Indole-3-Acetic Acids Are Endogenous Auxin Inhibitors, PLANT PHYSIOLOGY, vol.150, issue.3, pp.1310-1321, 2009.
DOI : 10.1104/pp.109.138529

P. E. Staswick, B. Serban, M. Rowe, I. Tiryaki, M. T. Maldonado et al., Characterization of an Arabidopsis Enzyme Family That Conjugates Amino Acids to Indole-3-Acetic Acid, THE PLANT CELL ONLINE, vol.17, issue.2, pp.616-627, 2005.
DOI : 10.1105/tpc.104.026690

P. E. Staswick, I. Tiryaki, R. , and M. L. , Jasmonate Response Locus JAR1 and Several Related Arabidopsis Genes Encode Enzymes of the Firefly Luciferase Superfamily That Show Activity on Jasmonic, Salicylic, and Indole-3-Acetic Acids in an Assay for Adenylation, THE PLANT CELL ONLINE, vol.14, issue.6, pp.1405-1415, 2002.
DOI : 10.1105/tpc.000885

A. N. Stepanova, J. Robertson-hoyt, J. Yun, L. M. Benavente, D. Y. Xie et al., TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development, Cell, vol.133, issue.1, pp.177-191, 2008.
DOI : 10.1016/j.cell.2008.01.047

J. D. Sterling, H. F. Quigley, A. Orellana, and D. Mohnen, The Catalytic Site of the Pectin Biosynthetic Enzyme alpha-1,4-Galacturonosyltransferase Is Located in the Lumen of the Golgi, PLANT PHYSIOLOGY, vol.127, issue.1, pp.360-371, 2001.
DOI : 10.1104/pp.127.1.360

S. Sugawara, S. Hishiyama, Y. Jikumaru, A. Hanada, T. Nishimura et al., Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis, Proceedings of the National Academy of Sciences, vol.106, issue.13, pp.5430-5435, 2009.
DOI : 10.1073/pnas.0811226106

L. Sun and S. Van-nocker, Analysis of promoter activity of members of the PECTATE LYASE-LIKE (PLL) gene family in cell separation in Arabidopsis, BMC Plant Biology, vol.10, issue.1, p.152, 2010.
DOI : 10.1186/1471-2229-10-152

W. Sun, M. J. Kieliszewski, and A. M. Showalter, Overexpression of tomato LeAGP-1 arabinogalactan-protein promotes lateral branching and hampers reproductive development, The Plant Journal, vol.31, issue.6, pp.870-881, 2004.
DOI : 10.1111/j.1365-313X.2004.02274.x

K. Swarup, E. Benkova, R. Swarup, I. Casimiro, B. Peret et al., The auxin influx carrier LAX3 promotes lateral root emergence, Nature Cell Biology, vol.121, issue.8, pp.946-954, 2008.
DOI : 10.1007/BF02668662

URL : https://hal.archives-ouvertes.fr/cea-00848585

R. Swarup, J. Friml, A. Marchant, K. Ljung, G. Sandberg et al., Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex, Genes & Development, vol.15, issue.20, pp.2648-2653, 2001.
DOI : 10.1101/gad.210501

X. Tan, L. I. Calderon-villalobos, M. Sharon, C. Zheng, C. V. Robinson et al., Mechanism of auxin perception by the TIR1 ubiquitin ligase, Nature, vol.62, issue.7136, pp.640-645, 2007.
DOI : 10.1038/nature05731

M. Tanimoto, J. Jowett, P. Stirnberg, D. Rouse, and O. Leyser, pax1-1 partially suppresses gain-of-function mutations in Arabidopsis AXR3/IAA17, BMC Plant Biology, vol.7, issue.1, p.20, 2007.
DOI : 10.1186/1471-2229-7-20

Y. Tao, J. L. Ferrer, K. Ljung, F. Pojer, F. Hong et al., Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants, Cell, vol.133, issue.1, pp.164-176, 2008.
DOI : 10.1016/j.cell.2008.01.049

K. Terasaka, J. J. Blakeslee, B. Titapiwatanakun, W. A. Peer, A. Bandyopadhyay et al., PGP4, an ATP Binding Cassette P-Glycoprotein, Catalyzes Auxin Transport in Arabidopsis thaliana Roots, THE PLANT CELL ONLINE, vol.17, issue.11, pp.2922-2939, 2005.
DOI : 10.1105/tpc.105.035816

G. W. Tian, M. H. Chen, A. Zaltsman, C. , and V. , Pollen-specific pectin methylesterase involved in pollen tube growth, Developmental Biology, vol.294, issue.1, pp.83-91, 2006.
DOI : 10.1016/j.ydbio.2006.02.026

Q. Tian, R. , and J. W. , Control of auxin-regulated root development by the Arabidopsis thaliana SHY2/IAA3 gene, Development, vol.126, pp.711-721, 1999.

S. B. Tiwari, G. Hagen, and T. Guilfoyle, The Roles of Auxin Response Factor Domains in Auxin-Responsive Transcription, THE PLANT CELL ONLINE, vol.15, issue.2, pp.533-543, 2003.
DOI : 10.1105/tpc.008417

S. B. Tiwari, G. Hagen, and T. J. Guilfoyle, Aux/IAA Proteins Contain a Potent Transcriptional Repression Domain, THE PLANT CELL ONLINE, vol.16, issue.2, pp.533-543, 2004.
DOI : 10.1105/tpc.017384

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC341922

S. B. Tiwari, X. J. Wang, G. Hagen, and T. J. Guilfoyle, AUX/IAA Proteins Are Active Repressors, and Their Stability and Activity Are Modulated by Auxin, THE PLANT CELL ONLINE, vol.13, issue.12, pp.2809-2822, 2001.
DOI : 10.1105/tpc.13.12.2809

R. Tobena-santamaria, M. Bliek, K. Ljung, G. Sandberg, J. N. Mol et al., FLOOZY of petunia is a flavin mono-oxygenase-like protein required for the specification of leaf and flower architecture, Genes & Development, vol.16, issue.6, pp.753-763, 2002.
DOI : 10.1101/gad.219502

D. L. Tsang, C. Edmond, J. L. Harrington, and T. S. Nuhse, Cell Wall Integrity Controls Root Elongation via a General 1-Aminocyclopropane-1-Carboxylic Acid-Dependent, Ethylene-Independent Pathway, PLANT PHYSIOLOGY, vol.156, issue.2, pp.596-604, 2011.
DOI : 10.1104/pp.111.175372

T. Ulmasov, G. Hagen, and T. J. Guilfoyle, ARF1, a Transcription Factor That Binds to Auxin Response Elements, Science, vol.276, issue.5320, pp.1865-1868, 1997.
DOI : 10.1126/science.276.5320.1865

T. Ulmasov, G. Hagen, and T. J. Guilfoyle, Activation and repression of transcription by auxin-response factors, Proceedings of the National Academy of Sciences, vol.96, issue.10, pp.5844-5849, 1999.
DOI : 10.1073/pnas.96.10.5844

T. Ulmasov, G. Hagen, and T. J. Guilfoyle, Dimerization and DNA binding of auxin response factors, The Plant Journal, vol.30, issue.3, pp.309-319, 1999.
DOI : 10.1073/pnas.96.10.5844

T. Ulmasov, Z. B. Liu, G. Hagen, and T. J. Guilfoyle, Composite Structure of Auxin Response Elements, THE PLANT CELL ONLINE, vol.7, issue.10, pp.1611-1623, 1995.
DOI : 10.1105/tpc.7.10.1611

T. Ulmasov, J. Murfett, G. Hagen, and T. J. Guilfoyle, Aux/IAA Proteins Repress Expression of Reporter Genes Containing Natural and Highly Active Synthetic Auxin Response Elements, THE PLANT CELL ONLINE, vol.9, issue.11, pp.1963-1971, 1997.
DOI : 10.1105/tpc.9.11.1963

K. Utsuno, T. Shikanai, Y. Yamada, and T. Hashimoto, AGR,an Agravitropic Locus of Arabidopsis thaliana, Encodes a Novel Membrane-Protein Family Member, Plant and Cell Physiology, vol.39, issue.10, pp.1111-1118, 1998.
DOI : 10.1093/oxfordjournals.pcp.a029310

T. Vernoux, G. Brunoud, E. Farcot, V. Morin, H. Van-den-daele et al., The auxin signalling network translates dynamic input into robust patterning at the shoot apex, Molecular Systems Biology, vol.127, issue.1, p.508, 2011.
DOI : 10.1242/dev.054973

URL : https://hal.archives-ouvertes.fr/hal-00828880

P. J. Verrier, D. Bird, B. Burla, E. Dassa, C. Forestier et al., Plant ABC proteins ??? a unified nomenclature and updated inventory, Trends in Plant Science, vol.13, issue.4, pp.151-159, 2008.
DOI : 10.1016/j.tplants.2008.02.001

URL : https://hal.archives-ouvertes.fr/hal-00319511

J. P. Vogel, T. K. Raab, C. Schiff, and S. C. Somerville, PMR6, a Pectate Lyase-Like Gene Required for Powdery Mildew Susceptibility in Arabidopsis, THE PLANT CELL ONLINE, vol.14, issue.9, pp.2095-2106, 2002.
DOI : 10.1105/tpc.003509

C. Volpi, M. Janni, V. Lionetti, D. Bellincampi, F. Favaron et al., The Ectopic Expression of a Pectin Methyl Esterase Inhibitor Increases Pectin Methyl Esterification and Limits Fungal Diseases in Wheat, Molecular Plant-Microbe Interactions, vol.24, issue.9, pp.1012-1019, 2011.
DOI : 10.1094/MPMI-01-11-0021

J. W. Wang, L. J. Wang, Y. B. Mao, W. J. Cai, H. W. Xue et al., Control of Root Cap Formation by MicroRNA-Targeted Auxin Response Factors in Arabidopsis, THE PLANT CELL ONLINE, vol.17, issue.8, pp.2204-2216, 2005.
DOI : 10.1105/tpc.105.033076

S. E. Whitney, M. J. Gidley, and S. J. Mcqueen-mason, Probing expansin action using cellulose/hemicellulose composites, The Plant Journal, vol.22, issue.4, pp.327-334, 2000.
DOI : 10.1046/j.1365-313x.2000.00742.x

L. Williams, C. C. Carles, K. S. Osmont, F. , and J. C. , A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes, Proceedings of the National Academy of Sciences, vol.102, issue.27, pp.9703-9708, 2005.
DOI : 10.1073/pnas.0504029102

S. Wolf, T. Rausch, and S. Greiner, The N-terminal pro region mediates retention of unprocessed type-I PME in the Golgi apparatus, The Plant Journal, vol.99, issue.4, pp.361-375, 2009.
DOI : 10.1111/j.1365-313X.2009.03784.x

M. Yamada, K. Greenham, M. J. Prigge, P. J. Jensen, E. et al., The TRANSPORT INHIBITOR RESPONSE2 Gene Is Required for Auxin Synthesis and Diverse Aspects of Plant Development, PLANT PHYSIOLOGY, vol.151, issue.1, pp.168-179, 2009.
DOI : 10.1104/pp.109.138859

J. Yang, H. S. Sardar, K. R. Mcgovern, Y. Zhang, and A. M. Showalter, A lysine-rich arabinogalactan protein in Arabidopsis is essential for plant growth and development, including cell division and expansion, The Plant Journal, vol.136, issue.4, pp.629-640, 2007.
DOI : 10.1111/j.1365-313X.2006.02985.x

Y. Yang, U. Z. Hammes, C. G. Taylor, D. P. Schachtman, and E. Nielsen, High-Affinity Auxin Transport by the AUX1 Influx Carrier Protein, Current Biology, vol.16, issue.11, pp.1123-1127, 2006.
DOI : 10.1016/j.cub.2006.04.029

M. F. Yanofsky, H. Ma, J. L. Bowman, G. N. Drews, K. A. Feldmann et al., The protein encoded by the Arabidopsis homeotic gene agamous resembles transcription factors, Nature, vol.346, issue.6279, pp.35-39, 1990.
DOI : 10.1038/346035a0

E. K. Yoon, J. H. Yang, J. Lim, S. H. Kim, S. K. Kim et al., Auxin regulation of the microRNA390-dependent transacting small interfering RNA pathway in Arabidopsis lateral root development, Nucleic Acids Research, vol.38, issue.4, pp.1382-1391, 2010.
DOI : 10.1093/nar/gkp1128

N. Zenser, A. Ellsmore, C. Leasure, C. , and J. , Auxin modulates the degradation rate of Aux/IAA proteins, Proceedings of the National Academy of Sciences, vol.98, issue.20, pp.11795-11800, 2001.
DOI : 10.1073/pnas.211312798

G. F. Zhang and L. A. Staehelin, Functional Compartmentation of the Golgi Apparatus of Plant Cells : Immunocytochemical Analysis of High-Pressure Frozen- and Freeze-Substituted Sycamore Maple Suspension Culture Cells, PLANT PHYSIOLOGY, vol.99, issue.3, pp.1070-1083, 1992.
DOI : 10.1104/pp.99.3.1070

Y. Zhao, S. K. Christensen, C. Fankhauser, J. R. Cashman, J. D. Cohen et al., A Role for Flavin Monooxygenase-Like Enzymes in Auxin Biosynthesis, Science, vol.291, issue.5502, pp.306-309, 2001.
DOI : 10.1126/science.291.5502.306

Y. Zhao, A. K. Hull, N. R. Gupta, K. A. Goss, J. Alonso et al., Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3, Genes & Development, vol.16, issue.23, pp.3100-3112, 2002.
DOI : 10.1101/gad.1035402