After the personalisation, the combination of dierent datasets from dierent patients can improve the generalisation of the learning method Preliminary evaluation on the echocardiography images was performed in Since echocardiography is the most widely used medical imaging modalities in the CRT, it is of great interest to estimate the cardiac electrical mapping from the 4D US images. First evaluation can be done by applying the learning method to dierent patient images with dierent pacing mode. However, the real validation can only be done by using the patient cardiac electrical mapping obtained using catheterisation. Appendix A List of Publications and Awards Journal Articles ? Note, real data. It will also yield better prediction since the training set would be closer to the real dataset Villain and N. Ayache. Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images. Medical Imaging, IEEE Transactions on: Special Issue on Medical Imaging in Computational Physiology, 2011. ,
Cardiac Electrophysiological Activation Pattern Estimation from Images using a Patient-Specic Database of Synthetic Image Sequences Note: In preparation for submission, Biomedical Engineering IEEE Transactions on, 2012. ,
Evaluation of Current Algorithms for Myocardial Tracking and Deformation: Cardiac Motion Analysis Challenge Note: Under review, Medical Image Analysis, 2012. ,
Synthetic Echocardiographic Image Sequences for Cardiac Inverse Electro-Kinematic Learning Medical Image Computing and Computer-Assisted Intervention -MICCAI 2011 Note: Oral presentation Workshop Papers ?, Selective Peer-Reviewed Conference Papers ? Villain and N. Ayache. Non-Invasive Activation Times Estimation using 3D Echocardiography Statistical Atlases and Computational Models of the Heart, pp.500-507, 2010. ,
Note: Oral presentation ? An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue, List of Publications and Awards LNCS Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges, pp.212-221, 2010. ,
Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence, Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM12), 2012. ,
DOI : 10.1007/978-3-642-36961-2_21
Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2), Proc. MIC- CAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM12), 2012. ,
Kinematic descriptors extracted from patient's 3D echocardiography . (a) (b) and (c) are the radial, circumferential and longitudinal strains whereas (d), (e) and (f) are the radial, circumferential and longitudinal displacements . Axis units are as explained in Fig ,
A new improved version of the realistic digital brain phantom, NeuroImage, vol.32, issue.1, pp.138-145, 2006. ,
DOI : 10.1016/j.neuroimage.2006.03.052
Computational Methods for Cardiac Electrophysiology, N. Ayache, editeur, Computational Models for the Human Body, pp.129-187, 2004. ,
DOI : 10.1016/S1570-8659(03)12002-9
The SIMRI project: a versatile and interactive MRI simulator, Journal of Magnetic Resonance, vol.173, issue.1, pp.97-115, 2005. ,
DOI : 10.1016/j.jmr.2004.09.027
An anthropomorphic beating heart phantom for cardiac X-ray CT imaging evaluation, Journal of Applied Clinical Medical Physics, vol.189, issue.4, p.2010, 2010. ,
DOI : 10.1120/jacmp.v11i1.3129
A new algorithm for the computation of the group logarithm of dieomorphisms, X. Pennec, editeur, 2nd MICCAI Workshop on Mathematical Foundations of Computational Anatomy, 2008. ,
Simulated 3D Ultrasound LV Cardiac Images for Active Shape Model Training, Medical Imaging Image Processing SPIE, vol.6512, p.65123, 2007. ,
Phenomenological Model of Diffuse Global and Regional Atrophy Using Finite-Element Methods, IEEE Transactions on Medical Imaging, vol.25, issue.11, pp.1417-1430, 2006. ,
DOI : 10.1109/TMI.2006.880588
Fast exact leave-one-out crossvalidation of sparse least-squares support vector machines, Neural Networks, vol.17, issue.10, p.14671475, 2004. ,
Leave-One-Out Cross-Validation Based Model Selection Criteria for Weighted LS-SVMs, IJCNN'06, pp.16611668-58, 2006. ,
Estimation of tissue contractility from cardiac cine-MRI using a biomechanical heart model, Biomechanics and Modeling in Mechanobiology, vol.11, pp.609630-2012, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00654541
An energypreserving muscle tissue model: formulation and compatible discretizations, International Journal for Multiscale Computational Engineering, vol.10, issue.25, pp.189211-189240, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00678772
Simulation based evaluation of cardiac motion estimation methods in tagged-MR Image sequences, Journal of Cardiovascular Magnetic Resonance, vol.13, issue.Suppl 1, p.360, 2011. ,
DOI : 10.1186/1532-429X-13-S1-P360
Temporal Dieomorphic Free-Form Deformation for Strain Quantication in 3D-US Images, Medical Image Computing and Computer-Assisted Intervention -MICCAI 2010, p.18, 2010. ,
Statistical Atlases and Computational Models of the Heart (STACOM) 2012 cardiac Motion Analysis Challenge (cMAC2), p.15, 2012. ,
Synthetic and Phantom Setups for the Second cardiac Motion Analysis Challenge (cMAC2), Proc. MIC- CAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM12), 2012. ,
Evaluation of a multimodality image (CT, MRI and PET) coregistration procedure on phantom and head and neck cancer patients: accuracy, reproducibility and consistency, Radiotherapy and Oncology, vol.69, issue.3, p.245, 2003. ,
DOI : 10.1016/j.radonc.2003.10.009
Personalization of Cardiac Motion and Contractility From Images Using Variational Data Assimilation, IEEE Transactions on Biomedical Engineering, vol.59, issue.1, pp.20-24, 2012. ,
DOI : 10.1109/TBME.2011.2160347
URL : https://hal.archives-ouvertes.fr/inria-00616183
An ITK Implementation of the Symmetric Log-Domain Dieomorphic Demons Algorithm, Insight Journal, vol.32, p.30, 2009. ,
Simulation of 3D Ultrasound with a Realistic Electro-mechanical Model of the Heart, LNCS, vol.4466, issue.88, pp.463473-463498, 2007. ,
DOI : 10.1007/978-3-540-72907-5_47
Three-Dimensional Cardiac Strain Estimation Using Spatio???Temporal Elastic Registration of Ultrasound Images: A Feasibility Study, IEEE Transactions on Medical Imaging, vol.27, issue.11, pp.15801591-15801615, 2008. ,
DOI : 10.1109/TMI.2008.2004420
Tetrahedral mesh generation from volumetric binary and gray-scale images, IEEE International Symposium on Biomedical Imaging (ISBI), p.11421145, 2009. ,
SOFA: A Multi-Model Framework for Interactive Physical Simulation, Studies in Mechanobiology Tissue Engineering and Biomaterials, vol.11, issue.54, pp.283321-283355, 2012. ,
DOI : 10.1007/8415_2012_125
URL : https://hal.archives-ouvertes.fr/hal-00681539
P5C-2 A New Convolution-Based Methodology to Simulate Ultrasound Images in a 2D / 3D Sector Format, 2007 IEEE Ultrasonics Symposium Proceedings, 2007. ,
DOI : 10.1109/ULTSYM.2007.564
Noninvasive Electrocardiographic Imaging (ECGI): Comparison to intraoperative mapping in patients, Heart Rhythm, vol.2, issue.4, pp.339354-339402, 2005. ,
DOI : 10.1016/j.hrthm.2004.12.022
Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI, 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), pp.98101-2012, 2012. ,
DOI : 10.1109/ISBI.2012.6235493
URL : https://hal.archives-ouvertes.fr/hal-00830243
A new fully-digital anthropomorphic and dynamic thorax/heart model, 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, p.6002, 2007. ,
DOI : 10.1109/IEMBS.2007.4353715
Three-Dimensional Mapping of Optimal Left Ventricular Pacing Site for Cardiac Resynchronization, Circulation, vol.115, issue.8, pp.953961-954010, 2007. ,
DOI : 10.1161/CIRCULATIONAHA.106.643718
A Clinician's Guide to Tissue Doppler Imaging, Circulation, vol.113, issue.10, p.3968, 2006. ,
DOI : 10.1161/CIRCULATIONAHA.105.579268
FIELD: A Program for Simulating Ultrasound Systems, 10th Nordic-Baltic Conference on Biomedical Imaging Published in Medical and Biological Engineering and Computing, p.351353, 1996. ,
The NLopt nonlinear-optimization package. Online, 2012. ,
A new extension of the Kalman lter to nonlinear systems, International Symposium on Aerospace/Defense Sensing , Simulation and Controls, pp.26-29, 1997. ,
Electromechanical wave imaging for noninvasive mapping of the 3D electrical activation sequence in canines and humans in vivo, Journal of Biomechanics, vol.45, issue.5, pp.856-864, 2012. ,
DOI : 10.1016/j.jbiomech.2011.11.027
All about MAX: a male adult voxel phantom for Monte Carlo calculations in radiation protection dosimetry, Physics in Medicine and Biology, vol.48, issue.10, p.1239, 2003. ,
DOI : 10.1088/0031-9155/48/10/301
All about FAX: a Female Adult voXel phantom for Monte Carlo calculation in radiation protection dosimetry, Physics in Medicine and Biology, vol.49, issue.23, p.5203, 2004. ,
MAX06 and FAX06: update of two adult human phantoms for radiation protection dosimetry, Physics in Medicine and Biology, vol.51, issue.14, p.3331, 2006. ,
DOI : 10.1088/0031-9155/51/14/003
Visualization and GPUaccelerated simulation of medical ultrasound from CT images, Computer Methods and Programs in Biomedicine, vol.94, p.250266, 2009. ,
Nonsupervised Ranking of Different Segmentation Approaches: Application to the Estimation of the Left Ventricular Ejection Fraction From Cardiac Cine MRI Sequences, IEEE Transactions on Medical Imaging, vol.31, issue.8, pp.1651-1660, 2012. ,
DOI : 10.1109/TMI.2012.2201737
URL : https://hal.archives-ouvertes.fr/hal-00726197
Spatio-temporal nonrigid registration for ultrasound cardiac motion estimation, IEEE Transactions on Medical Imaging, vol.24, issue.9, p.111326, 2005. ,
DOI : 10.1109/TMI.2005.852050
Shortest Path Refinement for Motion Estimation From Tagged MR Images, IEEE Transactions on Medical Imaging, vol.29, issue.8, pp.1560-1572, 2010. ,
DOI : 10.1109/TMI.2010.2045509
Physically-Constrained Dieomorphic Demons for the Estimation of 3D Myocardium Strain from Cine-MRI, Proceedings of Functional Imaging and Modeling of the Heart, p.201210, 2009. ,
iLogDemons: A Demons-Based Registration Algorithm for??Tracking Incompressible Elastic Biological Tissues, International Journal of Computer Vision, vol.28, issue.12, pp.92111-92135, 2011. ,
DOI : 10.1007/s11263-010-0405-z
URL : https://hal.archives-ouvertes.fr/inria-00616187
Fast parameter calibration of a cardiac electromechanical model from medical images based on the unscented transform, Biomechanics and Modeling in Mechanobiology, vol.4, issue.7, pp.51-54, 2012. ,
DOI : 10.1007/s10237-012-0446-z
URL : https://hal.archives-ouvertes.fr/hal-00813847
Cardiac Mechanical Parameter Calibration based on the Unscented Transform, Medical Image Computing and Computer-Assisted Intervention -MICCAI 2012, pp.4148-4177, 2012. ,
URL : https://hal.archives-ouvertes.fr/hal-00813848
An Incompressible Log-Domain Demons Algorithm for Tracking Heart Tissue, Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges, numéro 7085 de LNCS, pp.5567-5579, 2012. ,
DOI : 10.1007/978-3-642-28326-0_6
URL : https://hal.archives-ouvertes.fr/hal-00813851
Imaging asynchronous mechanical activation of the paced heart with tagged MRI, Magnetic Resonance in Medicine, vol.90, issue.4, pp.507513-50, 1998. ,
DOI : 10.1002/mrm.1910390402
A two-current model for the dynamics of cardiac membrane, Bulletin of Mathematical Biology, vol.65, issue.5, p.767793, 2003. ,
DOI : 10.1016/S0092-8240(03)00041-7
4D deformable models with temporal constraints: application to 4D cardiac image segmentation, Medical Image Analysis, vol.9, issue.1, 2005. ,
DOI : 10.1016/j.media.2004.06.025
URL : https://hal.archives-ouvertes.fr/hal-00682924
Threedimensional systolic strain patterns in the normal human left ventricle: Characterization with tagged MR imaging, Radiology, vol.214, p.453466, 2000. ,
Transmural Ultrasoundbased Visualization of Patterns of Action Potential Wave Propagation in Cardiac Tissue, Annals of Biomedical Engineering, vol.38, issue.50, pp.31123123-31123172, 2010. ,
Estimating motion from MRI data, Proceedings of the IEEE, pp.1627-1648, 2003. ,
DOI : 10.1109/JPROC.2003.817872
The BOBYQA algorithm for bound constrained optimization without derivatives, 2009. ,
Non-invasive Activation Times Estimation Using 3D Echocardiography, Statistical Atlases and Computational Models of the Heart, pp.212221-212268, 2010. ,
DOI : 10.1007/978-3-642-15835-3_22
URL : https://hal.archives-ouvertes.fr/inria-00616157
Medical Image Computing and Computer-Assisted Intervention -MICCAI 2011, LNCS, vol.6891, issue.87, pp.500507-56, 2011. ,
Evaluation of iLogDemons Algorithm for Cardiac Motion Tracking in Synthetic Ultrasound Sequence, Proc. MICCAI Workshop on Statistical Atlases and Computational Models of the Heart (STACOM12), pp.68-69, 2012. ,
DOI : 10.1007/978-3-642-36961-2_21
URL : https://hal.archives-ouvertes.fr/hal-00813860
Cardiac Electrophysiological Activation Pattern Estimation from Images using a Patient-Specic Database of Synthetic Image Sequences, Biomedical Engineering IEEE Transactions on, vol.87, pp.47-69, 2012. ,
Generation of Synthetic but Visually Realistic Time Series of Cardiac Images Combining a Biophysical Model and Clinical Images, press. (Cited on pages 9, pp.54-55, 2012. ,
DOI : 10.1109/TMI.2012.2220375
URL : https://hal.archives-ouvertes.fr/hal-00813861
Electromechanical wave imaging of normal and ischemic hearts in vivo, Medical Imaging IEEE Transactions on, vol.29, issue.50, pp.625635-625684, 2010. ,
Mapping of cardiac electrical activation with electromechanical wave imaging: An in silico???in vivo reciprocity study, Heart Rhythm, vol.8, issue.5, pp.752-759, 2011. ,
DOI : 10.1016/j.hrthm.2010.12.034
Personalisation of a Cardiac Electrophysiology Model using Optical Mapping and MRI for Prediction of Changes with Pacing, Bibliography Bio-Medical Engineering IEEE Transactions on, vol.58, issue.12, p.33393349, 2011. ,
3D Mesh Generation, CGAL Editorial Board, editeur, CGAL User and Reference Manual. 3.5 édition, p.27, 2009. ,
Accelerated whole-heart 3D CSPAMM for myocardial motion quantication, Magnetic Resonance in Medicine, vol.59, issue.4, p.75563, 2008. ,
Modeling and estimation of the cardiac electromechanical activity, Computers & Structures, vol.84, issue.28, pp.1743-1759, 2006. ,
DOI : 10.1016/j.compstruc.2006.05.003
Detecting the onset of myocardial contraction for establishing inverse electro-mechanical coupling in XMR guided RF ablation, Proceedings of International Symposium on Biomedical Imaging, pp.10551058-10551107, 2004. ,
URL : https://hal.archives-ouvertes.fr/inria-00615986
A dynamic elastic model for segmentation and tracking of the heart in MR image sequences, Medical Image Analysis, vol.14, issue.6, 2010. ,
DOI : 10.1016/j.media.2010.05.009
URL : https://hal.archives-ouvertes.fr/hal-00877519
A realistic spline-based dynamic heart phantom, IEEE Transactions on Nuclear Science, vol.46, issue.3, pp.503-506, 1999. ,
DOI : 10.1109/23.775570
Realistic CT simulation using the 4D XCAT phantom, Medical Physics, vol.44, issue.8, pp.38003808-38003815, 2008. ,
DOI : 10.1016/0020-708X(82)90248-4
Deformable biomechanical models: Application to 4D cardiac image analysis, Medical Image Analysis, vol.7, issue.4, p.475488, 2003. ,
DOI : 10.1016/S1361-8415(03)00068-9
URL : https://hal.archives-ouvertes.fr/inria-00615637
An electromechanical model of the heart for image analysis and simulation, IEEE Transactions on Medical Imaging, vol.25, issue.5, pp.612625-612650, 2006. ,
DOI : 10.1109/TMI.2006.872746
URL : https://hal.archives-ouvertes.fr/inria-00614991
Cardiac function estimation from MRI using a heart model and data assimilation: Advances and diculties, Medical Image Analysis, vol.10, issue.4, p.642656, 2006. ,
An anisotropic multifront fast marching method for real-time simulation of cardiac electrophysiology, Proceedings of Functional Imaging and Modeling of the Heart, pp.160169-160176, 2007. ,
URL : https://hal.archives-ouvertes.fr/inria-00616051
Patient-specic electromechanical models of the heart for the prediction of pacing acute eects in CRT: A preliminary clinical validation, 2012. ,
Stochastic nite element framework for simultaneous estimation of cardiac kinematic functions and material parameters, Medical Image Analysis, vol.7, issue.4, p.445464, 2003. ,
Non-Invasive Assessment of Left Ventricular Contraction Patterns Using Cardiac Magnetic Resonance Imaging to Identify Responders to Cardiac Resynchronization Therapy, Journal of the American College of Cardiology Cardiovascular Imaging, 2012. ,
A model for human ventricular tissue, AJP: Heart and Circulatory Physiology, vol.286, issue.4, pp.1573-1589, 2004. ,
DOI : 10.1152/ajpheart.00794.2003
Automatic Construction of 3D-ASM Intensity Models by Simulating Image Acquisition: Application to Myocardial Gated SPECT Studies, IEEE Transactions on Medical Imaging, vol.27, issue.11, pp.1655-1667, 2008. ,
DOI : 10.1109/TMI.2008.2004819
Realistic simulation of cardiac magnetic resonance studies modeling anatomical variability, trabeculae, and papillary muscles, Magnetic Resonance in Medicine, vol.65, issue.1, p.280288, 2011. ,
A Multimodal Database for the 1 st Cardiac Motion Analysis Challenge, Statistical Atlases and Computational Models of the Heart: Imaging and Modelling Challenges, pp.3344-3358, 2012. ,
DOI : 10.1007/978-3-642-28326-0_4
Evaluation of Current Algorithms for Myocardial Tracking and Deformation: Cardiac Motion Analysis Challenge Under review, Medical Image Analysis, 2012. ,
An Integrated Platform for Dynamic Cardiac Simulation and Image Processing: Application to Personalised Tetralogy of Fallot Simulation, 2008. ,
URL : https://hal.archives-ouvertes.fr/inria-00616120
Nonparametric Dieomorphic Image Registration with the Demons Algorithm, 2007. ,
Medical Image Computing and Computer-Assisted Intervention -MICCAI, LNCS, vol.4792, p.319326, 2007. ,
URL : https://hal.archives-ouvertes.fr/hal-00813875
Symmetric Log-Domain Dieomorphic Registration: A Demons-based Approach, 2008. ,
Medical Image Computing and Computer-Assisted Intervention -MICCAI, LNCS, vol.5241, issue.13, pp.754761-754773, 2008. ,
Modelling passive diastolic mechanics with quantitative MRI of cardiac structure and function, Medical Image Analysis, vol.13, issue.5, p.773784, 2009. ,
DOI : 10.1016/j.media.2009.07.006
Myocardial transversely isotropic material parameter estimation from in-silico measurements based on a reduced-order unscented Kalman filter, Journal of the Mechanical Behavior of Biomedical Materials, vol.4, issue.7, pp.1090-1102, 2011. ,
DOI : 10.1016/j.jmbbm.2011.03.018
VIP-MAN: AN IMAGE-BASED WHOLE-BODY ADULT MALE MODEL CONSTRUCTED FROM COLOR PHOTOGRAPHS OF THE VISIBLE HUMAN PROJECT FOR MULTI-PARTICLE MONTE CARLO CALCULATIONS, Health Physics, vol.78, issue.5, p.47686, 2000. ,
DOI : 10.1097/00004032-200005000-00003
Computerized three-dimensional segmented human anatomy, Medical Physics, vol.21, issue.2, p.299302, 1994. ,