The planetary ephemerides play a crucial role for spacecraft navigation, mission planning, reductionand analysis of the most precise astronomical observations. The construction of suchephemerides is highly constrained by the tracking observations, in particular range, of the spaceprobes collected by the tracking stations on the Earth. The present planetary ephemerides (DE,INPOP, EPM) are mainly based on such observations. However, the data used by the planetaryephemerides are not the direct raw tracking data, but measurements deduced after the analysisof raw data made by the space agencies and the access to such processed measurements remainsdifficult in terms of availability.The goal of the thesis is to use archives of past and present space missions data independentlyfrom the space agencies, and to provide data analysis tools for the improvement of theplanetary ephemerides INPOP, as well as to use improved ephemerides to perform tests ofphysics such as general relativity, solar corona studies, etc.The first part of the study deals with the analysis of the Mars Global Surveyor (MGS)tracking data as an academic case for understanding. The CNES orbit determination softwareGINS was used for such analysis. The tracking observations containing one-, two-, and threewayDoppler and two-way range are then used to reconstruct MGS orbit precisely and obtainedresults are consistent with those published in the literature. As a supplementary exploitationof MGS, we derived the solar corona model and estimated the average electron density alongthe line of sight separately for slow and fast wind regions. Estimated electron densities arecomparable with the one found in the literature. Fitting the planetary ephemerides, includingadditional data which were corrected for the solar corona perturbations, noticeably improves theextrapolation capability of the planetary ephemerides and the estimation of the asteroid masses(Verma et al., 2013a).The second part of the thesis deals with the complete analysis of the MESSENGER trackingdata. This analysis improved the Mercury ephemeris up to two order of magnitude comparedto any latest ephemerides. Such high precision ephemeris, INPOP13a, is then used to performgeneral relativity tests of PPN-formalism.[...]