The main purpose of this thesis is to study and develop an embedded brain computer interface (BCI) system using HW/SW methodology in order to satisfy the system specifications. A complete BCI system integrated in an acquisition system (OpenBCI) and a hardware platform based on the FPGA were achieved. The proposed system can be used in a variety of contexts: medical (for early diagnosis of pathologies, assisting people with severe disabilities to control home devices system through thought), technological (ubiquitous computing), industrial (communication with Robots), games (control a joystick in video games), etc. In our study, the proposed ICM platform was designed to control home devices through the thought of people with severe disabilities. A particular attention has been given to the study and implementation of the filtering module, adaptive and dynamic filtering, in the form of a coprocessor coded in HDL in order to reduce its execution time as it is the critical block in the returned ICM algorithms. For the feature extraction and classification algorithms, they are executed in the Nios-II processor using ANSI-C language. The prototype operates at 200 MHz and performs a real time classification with an execution delay of 0.4 second per trial. The power consumption of the proposed system is about 0.7 W.